Release History

1.1 (2015-08-26)

  • Added multi-resolution heatmaps (MRH).
  • Added stand-alone script for plotting MRH data.
  • Fixed requirements resolution for pip loading without requirements already installed.
  • Re-implemented Poisson model for HiC probability algorithm.
  • Lowered memory requirement for HiC data loading.
  • Added dockerfile for building docker image.

1.0.3 (2015-04-23)

  • Expanded functionality of Express to include support to Knight-Ruiz algorithm to both 5C and HiC algorthims.
  • Added binary counts option to Express in HiC.
  • Added non-logged counts functionality to Express in 5C.
  • Added pseudo-count option to Binning in HiC.
  • Dramatically sped up heatmap creation for ‘fend’-corrected heatmaps using probability or express corrections.
  • Added binary distance-dependence calculation alongside standard.

1.0.2 (2015-04-16)

  • Fixed Express algorithm stopping criteria.
  • Updated Probability algorithm and documentation.
  • Fixed bug introduced into HiC binning algorithm.
  • Added binning documentation.
  • Added Travis automated testing.